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dna methylation
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962
views
Estimate cell proportion from beta values using minfi estimateCellCounts?
minfi
cell proportion
estimateCellCounts
DNA Methylation
4.3 years ago
grayapply2009
• 0
1
vote
2
replies
1.9k
views
WGCNA on methylation data
normalization
DNA methylation
WGCNA
updated 5.0 years ago by
Peter Langfelder
★ 3.0k • written 5.0 years ago by
enora.fremy
• 0
1
vote
2
replies
1.0k
views
Comparing more than 2 experimental groups with MEDIPS?
medips
medip-seq
dna methylation
dmr analysis
updated 5.6 years ago by
Lukas Chavez
▴ 570 • written 5.6 years ago by
mtefit
• 0
7
votes
7
replies
1.6k
views
Using GenomicDataCommons R package to identify cases with both DNA methylation and gene expression data
R
gdc
rna-seq
dna methylation
updated 5.7 years ago by
Sean Davis
21k • written 5.7 years ago by
RichardJActon
▴ 50
1
vote
2
replies
1.2k
views
Odd Sample after SWAN normalisation, DNA methylation analysis EPIC array
minfi
normalization
outliers
dna methylation
densityplot
5.9 years ago
peter.fransquet
• 0
0
votes
0
replies
774
views
iEVORA wrapping up error
differential variability
dna methylation
iEVORA
DVP
6.2 years ago
poojitha.stemcell
▴ 10
0
votes
0
replies
1.1k
views
differential methylation analysis with RnBeads
rnbeads
methylation
methylationepic
dna methylation
6.4 years ago
gabrielrfries
• 0
0
votes
1
reply
1.1k
views
Problem in working with BiSeq - BSraw
dna methylation
biseq
updated 6.5 years ago by
Gordon Smyth
51k • written 6.5 years ago by
ahmad.moousavi
• 0
2
votes
5
replies
1.8k
views
Error when prepare the TCGAdata
tcgabiolinks
dna methylation
updated 6.6 years ago by
Marcel Ramos
700 • written 6.6 years ago by
michaelwxf2012
• 0
1
vote
1
reply
1.6k
views
Beta Value Analysis - DNA Methylation Dataset
dna methylation
illimina 450k methylation
beta
M
significance
updated 6.8 years ago by
James W. MacDonald
66k • written 6.8 years ago by
skids121
• 0
0
votes
0
replies
1.2k
views
DNA methylation 450k data - minfi - preprocessFunnorm - CNV cases vs non-CNV controls
CNV
minfi
preprocessing
dna methylation
7.3 years ago
Thomas
• 0
1
vote
2
replies
1.0k
views
Correlating DNA methylation and Illumina gene expression microarray data
microarray
HM450
dna methylation
cohcap
updated 7.5 years ago by
James W. MacDonald
66k • written 7.5 years ago by
poojitha.stemcell
▴ 10
0
votes
1
reply
1.2k
views
error when using bumphunter package with illumina 450k data
minfi
bumphunter
DNA methylation
illumina450k
updated 8.1 years ago by
James W. MacDonald
66k • written 8.1 years ago by
fleur_p90
• 0
13 results • Page
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Recent ...
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Comment: Ranking the GSEA Results
by
Lluís Revilla Sancho
▴ 730
You can have the ranking without the cutoff. If you don't keep any gene set after the cutoff then there is nothing to rank as you said, so…
Answer: Create a Graph w/ Only the Genes Interaction
by
Antonio
• 0
Thank you all, I solved my issue by creating a for loop. Cheers!
Comment: Ranking the GSEA Results
by
alserg
▴ 270
Apparently, it sends a notification to the developer on a new message after the tags were updated :) but not the change of tags itself
Comment: Ranking the GSEA Results
by
alserg
▴ 270
Where did you see ranking of genes by `log2FC * (-log10 p-value)`? I don't think I ever saw one and not sure what it should achieve. Aren't…
Comment: Trouble Installing DADA2 (warning: R new user)
by
shepherl
3.9k
As far as this ERROR for Bioc requires R version, Bioconductor is closely tied to an R release. Depending if you tried to use a premade s…
Votes
Comment: Ranking the GSEA Results
Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)
ChiPseeker package: plotAnnoPie identical colors for peakAnnoList features
Comment: How to get the DMR?
Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it
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